linumpy.io.allen#

Methods to download data from the Allen Institute.

Attributes#

AVAILABLE_RESOLUTIONS

Functions#

download_template(resolution[, cache, cache_dir])

Download a 3D average mouse brain.

Module Contents#

linumpy.io.allen.AVAILABLE_RESOLUTIONS = [10, 25, 50, 100][source]#

linumpy.io.allen.download_template(resolution, cache=True, cache_dir='.data/')[source]#

Download a 3D average mouse brain.

Parameters.#

resolution: Allen template resolution in micron. Must be 10, 25, 50 or 100.
cache: Keep the downloaded volume in cache
cache_dir: Cache directory

rtype:: Allen average mouse brain.

Parameters:

resolution (int)
cache (bool)
cache_dir (str)

Return type:

SimpleITK.Image